典型文献
Genome-wide identification and transcriptional profiling analysis of PIN/PILS auxin transporter gene families in Panax ginseng
文献摘要:
Objective:Plant hormones act as chemical messengers in the regulation of plant development and meta-bolism.The production of ginsenosides in Panax hybrid is promoted by auxins that are transported and accumulated by PIN-FORMED(PIN)and PIN-LIKES(PILS)auxin transporters.However,genome-wide studies of PIN/PILS of ginseng are still scarce.In current study,identification and transcriptional profiling of PIN/PILS gene families,as well as their potential relationship with ginsenoside biosynthesis in Panax ginseng were investigated.Methods:PIN/PILS genes in P.ginseng was identified via in silico genome-wide analysis,followed by phy-logenetic relationships,gene structure,and protein profiles investigation.Moreover,previously reported RNA-sequence data from various tissues and roots after infection were utilized for PIN/PILS genes expres-sion pattern analysis.The Pearson's correlation analysis of specific PIN/PILS genes expression level and main ginsenoside contents were taken to reveal the potential relationship between auxin transports and ginsenoside biosynthesis in P.ginseng.Results:A genome-wide search of P.ginseng genome for homologous auxin transporter genes identified a total of 17 PIN and 11 PILS genes.Sequence alignment,putative motif organization,and sub-cellular local-ization indicated redundant and complementary biological functions of these PIN/PILS genes.Most PIN/PILS genes were differentially expressed in a tissue-specific manner,and showed significant correlations with ginsenoside content correspondingly.Eight auxin transporter genes,including both PIN and PILS subfamily members,were positively correlated with ginsenoside content(cor>0.60;P-value<0.05).The expression levels of eleven auxin transporter genes were increased dramatically in the early stage(0-0.5 DPI)after Cylindrocarpon destructans infection,accompanied with various overall expression pat-terns,implying the dynamic auxin transport in response to biotic stress.Conclusion:Based on the results,we speculate that the accumulation or depletion in temporal or spatial manner of auxin by PIN/PILS transporters involved in the regulation of HMGR activity and subsequent ginsenoside biosynthesis.
文献关键词:
中图分类号:
作者姓名:
Shuiming Xiao;Yang Chu;Yanjun Chen;Qinghe Zhao;Baosheng Liao;Jingjing Zhang;Yuan Gao;Jiang Xu;Shilin Chen
作者机构:
Institute of Chinese Materia Medica,China Academy of Chinese Medical Sciences,Beijing 100700,China;College of Pharmacy,Hubei University of Chinese Medicine,Wuhan 430065,China;Institute of Medicinal Plant Development,Chinese Academy of Medical Sciences,Beijing 100193,China
文献出处:
引用格式:
[1]Shuiming Xiao;Yang Chu;Yanjun Chen;Qinghe Zhao;Baosheng Liao;Jingjing Zhang;Yuan Gao;Jiang Xu;Shilin Chen-.Genome-wide identification and transcriptional profiling analysis of PIN/PILS auxin transporter gene families in Panax ginseng)[J].中草药(英文版),2022(01):48-57
A类:
PILS,auxins,FORMED,LIKES,Cylindrocarpon,destructans
B类:
Genome,wide,identification,transcriptional,profiling,analysis,PIN,families,Panax,ginseng,Objective,Plant,hormones,chemical,messengers,regulation,plant,development,meta,bolism,production,ginsenosides,hybrid,promoted,by,that,are,transported,accumulated,transporters,However,genome,studies,still,scarce,In,current,study,well,their,potential,biosynthesis,were,investigated,Methods,genes,was,identified,via,silico,followed,phy,logenetic,relationships,structure,protein,profiles,investigation,Moreover,previously,reported,sequence,data,from,various,tissues,roots,after,infection,utilized,pattern,specific,expression,main,contents,taken,reveal,between,transports,Results,search,homologous,total,Sequence,alignment,putative,motif,organization,cellular,local,indicated,redundant,complementary,biological,functions,these,Most,differentially,expressed,manner,showed,significant,correlations,correspondingly,Eight,including,both,subfamily,members,positively,correlated,value,levels,eleven,increased,dramatically,early,stage,DPI,accompanied,overall,terns,implying,dynamic,response,biotic,stress,Conclusion,Based,results,speculate,accumulation,depletion,temporal,spatial,involved,HMGR,activity,subsequent
AB值:
0.447759
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