典型文献
Genome-wide characterization of MATE family members in Cucumis melo L.and their expression profiles in response to abiotic and biotic stress
文献摘要:
The multidrug and toxic compound extrusion(MATE)family plays pivotal roles in the detoxification process in plants,while no information has been provided for this gene family in melon(Cucumis melo L.)thus far,limiting our understanding of its functions in melon acclimation to stressful environments.In this study,a total of 39 MATEs(CmMATE1-CmMATE39)were observed in the melon genome;these were unevenly distributed in all chromosomes,with the most on Chromosome 1.Based on their orthologous relationship with those from Arabidopsis,rice,and sorghum,melon MATEs were clustered into three subfamilies of Clades Ⅰ,Ⅱ,and Ⅲ,wherein 23,9,and 7 members were included,respectively.Variable exon number was observed in CmMATEs,and the most were harbored by CmMATE8.Gene ontology(GO)term and cis-regulatory element(CRE)analyses pointed to the potential roles of CmMATEs in both the regulation of melon development and acclimation to various abiotic and biotic stressors.The RNA-seq and qRT-PCR(quantitative real-time PCR)results demonstrated that under normal growth conditions,CmMATEs were expressed in a tissue-and development-specific manner,while their abundance apparently varied in a stress-dependent manner when melon plants were exposed to unfavorable environmental conditions.Altogether,these observations could expand our knowledge about the plant MATE family and benefit functional genomics analysis for CmMATEs in the future.
文献关键词:
中图分类号:
作者姓名:
Shuoshuo Wang;Kun Chen;Jiayu Zhang;Jianquan Wang;Haosen Li;Xiaoyu Yang;Qinghua Shi
作者机构:
College of Horticulture Science and Engineering,Shandong Agricultural University,Tai'an,Shandong 271018,China;Institute of Vegetables,Shangqiu Academy of Agriculture and Forestry Sciences,Shangqiu,Henan 476002,China;State Key Laboratory of Crop Biology,Shandong Agricultural University,Tai'an,Shandong 271018,China
文献出处:
引用格式:
[1]Shuoshuo Wang;Kun Chen;Jiayu Zhang;Jianquan Wang;Haosen Li;Xiaoyu Yang;Qinghua Shi-.Genome-wide characterization of MATE family members in Cucumis melo L.and their expression profiles in response to abiotic and biotic stress)[J].园艺学报(英文版),2022(04):474-488
A类:
MATEs,CmMATE1,CmMATE39,CmMATEs,CmMATE8
B类:
Genome,wide,characterization,family,members,Cucumis,their,expression,profiles,response,abiotic,multidrug,toxic,compound,extrusion,plays,pivotal,roles,detoxification,process,plants,while,information,has,been,provided,this,gene,melon,thus,far,limiting,our,understanding,its,functions,acclimation,stressful,environments,In,study,total,were,observed,genome,these,unevenly,distributed,all,chromosomes,most,Chromosome,Based,orthologous,relationship,those,from,Arabidopsis,rice,sorghum,clustered,into,three,subfamilies,Clades,wherein,included,respectively,Variable,exon,number,was,harbored,by,Gene,ontology,term,cis,regulatory,element,CRE,analyses,pointed,potential,both,regulation,development,various,stressors,seq,qRT,quantitative,real,results,demonstrated,that,normal,growth,conditions,expressed,tissue,specific,manner,abundance,apparently,varied,dependent,when,exposed,unfavorable,environmental,Altogether,observations,could,expand,knowledge,about,benefit,functional,genomics,analysis,future
AB值:
0.568812
相似文献
机标中图分类号,由域田数据科技根据网络公开资料自动分析生成,仅供学习研究参考。