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典型文献
A deep learning-integrated phenotyping pipeline for vascular bundle phenotypes and its application in evaluating sap flow in the maize stem
文献摘要:
Plant vascular bundles are responsible for water and material transportation,and their quantitative and functional evaluation is desirable in plant research.At the single-plant level,the number,size,and distri-bution of vascular bundles vary widely,posing a challenge to automatically and accurately identifying and quantifying them.In this study,a deep learning-integrated phenotyping pipeline was developed to robustly and accurately detect vascular bundles in Computed Tomography(CT)images of stem intern-odes.Two semantic indicators were used to evaluate and identify a suitable feature extraction network for semantic segmentation models.The epidermis thickness of maize stem was evaluated for the first time and adjacent vascular bundles were improved using an adaptive watershed-based approach.The counting accuracy(R2)of vascular bundles was 0.997 for all types of stem internodes,and the measured accuracy of size traits was over 0.98.Combining sap flow experiments,multiscale traits of vascular bun-dles were evaluated at the single-plant level,which provided an insight into the water use efficiency of the maize plant.
文献关键词:
作者姓名:
Jianjun Du;Ying Zhang;Xianju Lu;Minggang Zhang;Jinglu Wang;Shengjin Liao;Xinyu Guo;Chunjiang Zhao
作者机构:
Beijing Key Lab of Digital Plant,Research Center of Information Technology,Beijing Academy of Agriculture and Forestry Sciences,Beijing 100097,China
引用格式:
[1]Jianjun Du;Ying Zhang;Xianju Lu;Minggang Zhang;Jinglu Wang;Shengjin Liao;Xinyu Guo;Chunjiang Zhao-.A deep learning-integrated phenotyping pipeline for vascular bundle phenotypes and its application in evaluating sap flow in the maize stem)[J].作物学报(英文版),2022(05):1424-1434
A类:
intern
B类:
deep,learning,integrated,phenotyping,pipeline,vascular,phenotypes,application,evaluating,sap,flow,maize,stem,Plant,bundles,are,responsible,material,transportation,their,quantitative,functional,evaluation,desirable,plant,research,At,single,level,number,size,distri,bution,vary,widely,posing,challenge,automatically,accurately,identifying,quantifying,them,In,this,study,was,developed,robustly,detect,Computed,Tomography,images,Two,semantic,indicators,were,used,suitable,feature,extraction,network,segmentation,models,epidermis,thickness,evaluated,first,adjacent,improved,using,adaptive,watershed,approach,counting,accuracy,internodes,measured,traits,over,Combining,experiments,multiscale,which,provided,insight,into,efficiency
AB值:
0.531863
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