首站-论文投稿智能助手
典型文献
A reproducible and sensitive method for generating high-quality transcriptomes from single whitefly salivary glands and other low-input tissues
文献摘要:
Transcriptomic studies are an important tool for understanding the molecular pathways underlying host plant use by agricultural pests,including vectors of damaging plant pathogens.Thus far,bulk RNA-Seq has been the main approach for non-model in-sects.This method relies on pooling large numbers of whole organisms or hundreds of in-dividually dissected organs.The latter approach is logistically challenging,may introduce artifacts of handling and storage,and is not compatible with biological replication.Here,we tested an approach to generate transcriptomes of individual salivary glands and other low-input body tissues from whiteflies(Bemisia tabaci MEAM1),which are major vectors of plant viruses.By comparing our outputs to published bulk RNA-Seq datasets for whole whitefly bodies and pools of salivary glands,we demonstrate that this approach recov-ers similar numbers of transcripts relative to bulk RNA-Seq in a tissue-specific manner,and for some metrics,exceeds performance of bulk tissue RNA-Seq.Libraries generated from individual salivary glands also yielded additional novel transcripts not identified in pooled salivary gland datasets,and had hundreds of enriched transcripts when compared with whole head tissues.Overall,our study demonstrates that it is feasible to produce high quality,replicated transcriptomes of whitefly salivary glands and other low-input tissues.We anticipate that our approach will expand hypothesis-driven research on salivary glands of whiteflies and other Hemiptera,thus enabling novel control strategies to disrupt feeding and virus transmission.
文献关键词:
作者姓名:
Marco Gebiola;Brandon H.Le;Kerry E.Mauck
作者机构:
Department of Entomology,University of California Riverside,Riverside,California;Department of Botany and Plant Sciences,University of California Riverside,Riverside,California;Institute of Integrative Genome Biology,University of California Riverside,Riverside,California,USA
引用格式:
[1]Marco Gebiola;Brandon H.Le;Kerry E.Mauck-.A reproducible and sensitive method for generating high-quality transcriptomes from single whitefly salivary glands and other low-input tissues)[J].中国昆虫科学(英文版),2022(05):1318-1328
A类:
whitefly,sects,dividually,logistically,whiteflies
B类:
reproducible,sensitive,method,generating,high,quality,transcriptomes,from,single,salivary,glands,other,low,input,tissues,Transcriptomic,studies,important,tool,understanding,molecular,pathways,underlying,host,plant,by,agricultural,pests,including,vectors,damaging,pathogens,Thus,far,bulk,Seq,has,been,main,approach,model,This,relies,pooling,large,numbers,whole,organisms,hundreds,dissected,organs,latter,challenging,may,introduce,artifacts,handling,storage,not,compatible,biological,replication,Here,we,tested,individual,body,Bemisia,tabaci,MEAM1,which,major,viruses,By,comparing,our,outputs,published,datasets,bodies,pools,that,this,recov,similar,transcripts,relative,specific,manner,some,metrics,exceeds,performance,Libraries,generated,also,yielded,additional,novel,identified,pooled,had,enriched,when,compared,head,Overall,study,demonstrates,feasible,produce,replicated,We,anticipate,will,expand,hypothesis,driven,research,Hemiptera,thus,enabling,control,strategies,disrupt,feeding,transmission
AB值:
0.543538
相似文献
Cultivated hawthorn (Crataegus pinnatifida var. major) genome sheds light on the evolution of Maleae (apple tribe)
Ticao Zhang;Qin Qiao;Xiao Du;Xiao Zhang;Yali Hou;Xin Wei;Chao Sun;Rengang Zhang;Quanzheng Yun;M.James C.Crabbe;Yves Van de Peer;Wenxuan Dong-College of Chinese Material Medica,Yunnan University of Chinese Medicine,Kunming 650500,China;School of Agriculture,Yunnan University,Kunming 650091,China;College of Horticulture,Shenyang Agricultural University,Shenyang 110866,China;Key Laboratory of Beibu Gulf Environment Change and Resources Utilization of Ministry of Education,Nanning Normal University,Guangxi,Nanning 530001,China;Beijing Ori-Gene Science and Technology Co.Ltd,Beijing 102206,China;Wolfson College,Oxford University,Oxford,UK;Institute of Biomedical and Environmental Science & Technology,School of Life Sciences,University of Bedfordshire,Park Square,Luton,UK;School of Life Sciences,Shanxi University,Taiyuan 030006,China;Department of Plant Biotechnology and Bioinformatics,Center for Plant Systems Biology,Ghent University,VIB,9052,Ghent,Belgium;Department of Biochemistry,Genetics and Microbiology,University of Pretoria,Pretoria 0028,South Africa;College of Horticulture,Nanjing Agricultural University,Nanjing 210095,China
The genome of Hibiscus hamabo reveals its adaptation to saline and waterlogged habitat
Zhiquan Wang;Jia-Yu Xue;Shuai-Ya Hu;Fengjiao Zhang;Ranran Yu;Dijun Chen;Yves Van de Peer;Jiafu Jiang;Aiping Song;Longjie Ni;Jianfeng Hua;Zhiguo Lu;Chaoguang Yu;Yunlong Yin;Chunsun Gu-Institute of Botany,Jiangsu Province and Chinese Academy of Sciences,Nanjing,210014,China;College of Horticulture,Academy for Advanced Interdisciplinary Studies,Nanjing Agricultural University,Nanjing 210095,China;State Key Laboratory of Pharmaceutical Biotechnology,School of Life Sciences,Nanjing University,Nanjing 210023,China;Department of Plant Biotechnology and Bioinformatics,Ghent University,VIB-UGent Center for Plant Systems Biology,B-9052 Ghent,Belgium;Department of Biochemistry,Genetics and Microbiology,University of Pretoria,Pretoria 0028,South Africa;College of Horticulture,Nanjing Agricultural University,Nanjing 210095,China;College of Forest Sciences,Nanjing Forestry University,Nanjing,210037,China;Jiangsu Key Laboratory for the Research and Utilization of Plant Resources,Jiangsu Utilization of Agricultural Germplasm,Nanjing,210014,China
机标中图分类号,由域田数据科技根据网络公开资料自动分析生成,仅供学习研究参考。