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典型文献
A genome for Cissus illustrates features underlying its evolutionary success in dry savannas
文献摘要:
Cissus is the largest genus in Vitaceae and is mainly distributed in the tropics and subtropics.Crassulacean acid metabolism(CAM),a photosynthetic adaptation to the occurrence of succulent leaves or stems,indicates that convergent evolution occurred in response to drought stress during species radiation.Here we provide the chromosomal level assembly of Cissus rotundifolia(an endemic species in Eastern Africa)and a genome-wide comparison with grape to understand genome divergence within an ancient eudicot family.Extensive transcriptome data were produced to illustrate the genetics underpinning C.rotundifolia's ecological adaption to seasonal aridity.The modern karyotype and smaller genome of C.rotundifolia(n=12,350.69 Mb/1C),which lack further whole-genome duplication,were mainly derived from gross chromosomal rearrangements such as fusions and segmental duplications,and were sculpted by a very recent burst of retro transposon activity.Bias in local gene amplification contributed to its remarkable functional divergence from grape,and the specific proliferated genes associated with abiotic and biotic responses(e.g.HSP-20,NBS-LRR)enabled C.rotundifolia to survive in a hostile environment.Reorganization of existing enzymes of CAM characterized as diurnal expression patterns of relevant genes further confer the ability to thrive in dry savannas.
文献关键词:
作者姓名:
Haiping Xin;Yi Wang;Qingyun Li;Tao Wan;Yujun Hou;Yuanshuang Liu;Duncan Kiragu Gichuki;Huimin Zhou;Zhenfei Zhu;Chen Xu;Yadong Zhou;Zhiming Liu;Rongjun Li;Bing Liu;Limin Lu;Hongsheng Jiang;Jisen Zhang;Junnan Wan;Rishi Aryal;Guangwan Hu;Zhiduan Chen;Robert Wahiti Gituru;Zhenchang Liang;Jun Wen;Qingfeng Wang
作者机构:
Core Botanical Gardens/Wuhan Botanical Garden,Chinese Academy of Sciences,Wuhan 430074,China;CAS Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture,Wuhan Botanical Garden,Chinese Academy of Sciences,Wuhan 430074,China;Sino-Africa Joint Research Center,Chinese Academy of Sciences,Wuhan 430074,China;CAS Key Laboratory of Plant Resources,Institute of Botany,Chinese Academy of Science,Beijing 100093,China;University of Chinese Academy of Sciences,Beijing 100049,China;Key Laboratory of Southern Subtropical Plant Diversity,Fairy Lake Botanical Garden,Shenzhen&Chinese Academy of Science,Shenzhen 518004,China;State Key Laboratory of Systematic and Evolutionary Botany,Institute of Botany,Chinese Academy of Science,Beijing 100093,China;Center for Genomics and Biotechnology,Haixia Institute of Science and Technology,Fujian Agriculture and Forestry University,Fuzhou 350002,China;Department of Horticultural Science,North Carolina State University,Raleigh,NC 27695,USA;Department of Botany,Jomo Kenyatta University of Agriculture and Technology,62000-00200,Nairobi,Kenya;Department of Botany,National Museum of Natural History,Smithsonian Institution,Washington DC 20013-7012,USA
引用格式:
[1]Haiping Xin;Yi Wang;Qingyun Li;Tao Wan;Yujun Hou;Yuanshuang Liu;Duncan Kiragu Gichuki;Huimin Zhou;Zhenfei Zhu;Chen Xu;Yadong Zhou;Zhiming Liu;Rongjun Li;Bing Liu;Limin Lu;Hongsheng Jiang;Jisen Zhang;Junnan Wan;Rishi Aryal;Guangwan Hu;Zhiduan Chen;Robert Wahiti Gituru;Zhenchang Liang;Jun Wen;Qingfeng Wang-.A genome for Cissus illustrates features underlying its evolutionary success in dry savannas)[J].园艺研究(英文),2022(01):29-42
A类:
Cissus,Crassulacean,succulent,eudicot
B类:
genome,illustrates,features,underlying,its,evolutionary,success,dry,savannas,largest,genus,Vitaceae,mainly,distributed,subtropics,acid,metabolism,CAM,photosynthetic,adaptation,occurrence,leaves,stems,indicates,that,convergent,occurred,drought,stress,during,species,radiation,Here,provide,chromosomal,level,assembly,rotundifolia,endemic,Eastern,Africa,wide,comparison,grape,understand,divergence,within,ancient,family,Extensive,transcriptome,data,were,produced,genetics,underpinning,ecological,adaption,seasonal,aridity,modern,karyotype,smaller,Mb,1C,which,lack,further,whole,derived,from,gross,rearrangements,such,fusions,segmental,duplications,sculpted,by,very,recent,burst,retro,transposon,activity,Bias,local,amplification,contributed,remarkable,functional,specific,proliferated,genes,associated,abiotic,responses,HSP,NBS,LRR,enabled,survive,hostile,environment,Reorganization,existing,enzymes,characterized,diurnal,expression,patterns,relevant,confer,ability,thrive
AB值:
0.654054
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